Student Publications
Dunlap, T.B., Cook, E.C., Rumi-Masante, J., Arvin, H.G., Lester, T.E., and T.P. Creamer. 2013. The distal helix in the regulatory domain of calcineurin is improtant for domain stability and enzyme function. Biochemistry. Dec 3;52(48):8643-51.
Dinkins RD, Barnes A, Waters W*(2010) Microarray analysis of endophyte-infected and endophyte-free tall fescue. J Plant Physiol 167:1197-1203.
Dinkins RD, Majee SM, Nayak NR, Martin D, Xu Q, Belcastro MP, Houtz RL, Downie AB. (2008) Changing transcriptional initiation sites and alternative 5'- and 3'-splice site selection of the first intron deploys Arabidopsis PROTEIN ISOASPARTYL METHYLTRANSFERASE2 variants to different subcellular compartments. Plant J 55:1-13 (DOI: 10.1111/j.1365-313X.2008.03471.x).
Xu, Q., M.P. Belcastro, S.V. Dolan, R.D. Dinkins, L.M.A. Dirk, S.G. Clarke, and A.B. Downie. 2004. A second protein L-isoaspartly (D-aspartyl) methyltransferase gene in Arabidopsis produces two transcripts whose products are targeted to the nucleus. Plant Physiol. 136:2652-2664.
Goodin, M.M., R. Chakrabarty, S. Yelton, K. Martin, A. Clark, and R. Brooks. 2007. Membrane and protein dynamics in live plant nuclei infected with Sonchus yellow net virus, a plant-adapted rhabdovirus. J. Gen Virol. 88:1810-1820.
Brooks, S.A., R.B. Terry, and E. Bailey. 2002. Association of PCR-RFLP for KIT with Tobiano coat colour in horses. Animal Genetics. 33: 301-303.
Evans, Heather M., Grady L. Bryant, 3rd, and Beth A. Garvy. The Life Cycles Stages of Pneumocystis murina Opposing Effects on the Immune Response to This Opportunistic, Fungal Pathogen. Infection and Immunity. 84.11 (2016): 3195-205.
Fox, C.W., M. L. Bush, D.A. Roff, and W.G. Wallin. 2004. The evolutionary genetics of lifespan and mortality rates in two populations of the seed beetle, Callosobruchus maculatus. Heredity. 92:170-181.
Fox, C.W., M. L. Bush, and W.G. Wallin. 2003. Maternal age affects adult longevity in the seed beetle, Callosobruchus maculatus. Functional Ecology. 17:811-820.
Jarrett SG, Carter KM, D'Orazio JA. Paracrine regulation of melanocyte genomic stability: a focus on nucleotide excision repair. Pigment Cell Melanoma Research. 30, 284-293; May 2017.
Wolf Horrell EM, Jarrett SG, Carter KM, D'Orazio JA. Divergence of cAMP signaling pathways mediating augmented nucleotide excision repair and pigment induction in melanocytes. Experimental Dermatology. 135, 3086-96; July 2017.
Jarrett SG, Carter KM, Shelton BJ, D'Orazio JA. The melanocortin signaling cAMP axis accelerates repair and reduces mutagenesis of platinum-induced DNA damage. Scientific Reports. 7(1):11708; September 2017.
Szoboszlay, M., Lambers, J., Chappell, J., Kupper, J., Moe, L., McNear, D. Jr., 2015. Comparison of root system architecture and rhizosphere microbial communities of Balsas teosinte and domesticated corn cultivars. Soil Biology and Biochemistry. 80 (2015) 34-44.
Dinkins, R.D., H.M. Conn, L.M.A. Dirk, M.A. Williams, and R.L. Houtz. 2003. The Arabidopsis thaliana peptide deformylase 1 protein is localized to both mitochondria and chloroplasts. Plant Sci. 165:751-758.
Crowdus, C.A., A.E. Marsh, W.J. Saville, D.S. Lindsay, J.P. Dubey, D.E. Granstrom, and D.K. Howe. 2008. SnSAG5 is an alternative surface antigen of Sarcocystis neurona strains that is mutually exclusive to SnSAG1. Veterinary Parasitology. 158(1-2):36-43.
Morford, L.A., C. Davis, L. Jin, A. Dobierzewska, M.L. Peterson, and B.T. Spear. 2007. The oncofetal gene glypican 3 is regulated in the postnatal liver by zinc fingers and homeoboxes 2 in the regenerating liver by alpha-fetoprotein regulator 2. Hepatology. [Epub ahead of print] PMID: 17668883 [PubMed - as supplied by publisher].
Dean, J. L. and S.L. Dobson. 2004. Characterization of Wolbachia infections and interspecific crosses of Aedes (Stegomyia) polynesiensis and Ae. (Stegomyia) riversi (Diptera: Culididae). J. Med. Entomol. 41:894-900.
Delaney, K. J., R. Xu, J. Zhang, Q.Q Li, K.Y. Yun, D.F. Falcone, and A.G. Hunt. 2006. Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit. Plant Physiol. 140:1507-1521.
Magnani R, Chaffin B, Dick E, Bricken ML, Houtz RL, Bradley LH. (2012) Utilization of a calmodulin lysine methyltransferase co-expression system for the generation of a combinatorial library of post-translationally modified proteins. Protein Expression & Purification, 86: 83-88. dx.doi.org/10.1016/j.pep.2012.09.012 PMID: 23036357
Bunn RC, Adatorwovor R, Smith RR, Ray PD, Fields SE, Keeble AR, Fry CS, Uppuganti S, Nyman JS, Fowlkes JL, Kalaitzoglou E. Pharmacologic Inhibition of Myostatin With a Myostatin Antibody Improves the Skeletal Muscle and Bone Phenotype of Male Insulin-Deficient Diabetic Mice. JBMR Plus. 2023 Oct 26;7(11):e10833. doi: 10.1002/jbm4.10833. PMID: 38025035; PMCID: PMC10652179.
Dirk, L. M., E.M. Flynn, K. Dietzel, J.F. Couture, R.C. Trievel, and R.L. Houtz. 2007. Kinetic manifestation of processivity during multiple methylations catalyzed by SET domain protein methyltransferases. Biochemistry. 46:3905-3915.
Trievel, R.C., E.M. Flynn, R.L. Houtz, and J.H. Hurley. 2003. Mechanism of multiple lysine methylation by the SET domain enzyme Rubisco LSMT. Nature Structural Biology. 10:545-552.
Pitts, M.G., Nardo, D., Isom, C.M, and V.J. Venditto. 2020. Autoantibody responses to apolipoprotein Al are not diet-or sex-linked in C57BL/6 mice. ImmunoHorizons. 4(8):455-463
Ramalho, T.O., A.R. Figueira, R. Wang, O. Jones, L.E. Harris and M.M. Goodin. 2015. Detection and survey of coffee ringspot virus in Brazil. Archives of Virology. 160:1-9 DOI 10.1007/s00705-015-2663-0
Wilson, M.E., K.F. Allred, E.M. Kordik, D.K. Jasper, A.N. Rosewell, and A.J. Bisotti. 2007. Gender-specific effects of HIV protease inhibitors on body mass in mice. AIDS Res.Ther. 4:8
Ramalho, T.O., A.R. Figueira, R. Wang, O. Jones, L.E. Harris and M.M. Goodin. 2015. Detection and survey of coffee ringspot virus in Brazil. Archives of Virology. 160:1-9 DOI 10.1007/s00705-015-2663-0
Bandyopadhyay, A., K. Kopperud, G. Anderson, K. Martin, M. Goodin. 2010. An integrated protein localization and interaction map for Potato yellow dwarf virus, type species of the genus Nucleorhabdovirus. Virology. Jun 20;402(1):61-71.
K. Martin, K. Kopperud, R. Chakrabarty, R. Banerjee, R. Brooks*, M.M. Goodin. 2009. Transient expression in Nicotiana benthamiana fluorescent marker line provides enhanced definition of protein localization, movement and interactions in planta. Plant J. 59, 150–162.
Szoboszlay, M., Lambers, J., Chappell, J., Kupper, J., Moe, L., McNear, D. Jr., 2015. Comparison of root system architecture and rhizosphere microbial communities of Balsas teosinte and domesticated corn cultivars. Soil Biology and Biochemistry. 80 (2015) 34-44.
Manoj Majee, Santosh Kumar, Praveen Kumar Kathare, Shuiqin Wu, Derek Gingerich, Nihar R. Nayak, Louai Salaita, Randy Dinkinse, Kathleen Martinf,7, Michael Goodin, Lynnette M. A. Dirk, Taylor D. Lloyd, Ling Zhu, Joseph Chappell, Arthur G. Hunt, Richard Vierstra, Enamul Huq, and A. Bruce Downie(2017).KELCH F-BOX protein positively influences Arabidopsis seed germination by targeting PHYTOCHROME-INTERACTING FACTOR1.
Manoj Majee, Shuiqin Wu, Louai Salaita, Derek Gingerich, Lynnette M.A. Dirk, Joseph Chappell, Art G. Hunt, Richard Vierstra, A. Bruce Downie.2017.A misannotated locus positively influencing Arabidopsis seed germination is deconvoluted using multiple methods, including surrogate splicing.
Wilkinson, H.H., M.R. Siegel, J.D. Blankenship, A.C. Mallory, L.P. Bus, and C.L. Schardl. 2000. Contribution of fungal loline alkaloids to protection from aphids in a grass-endophyte mutualism. Molecular Plant-Microbe Interactions. 13:1027-1033.
Schroder, E.A., Burgess, D.E., Manning, C.L., Zhao, Y., Moss, A.J., Patwardhan, A., Elayi, C.S., Esser, K.A., and B.P. Delisle. 2014. Light phase-restricted feeding slows basal heart rate to exaggerate the type-3 long QT syndrome phenotype in mice. Am J Physiol Heart Circ Physio. Dec15;307(12):H1777-85.
Fath-Goodin, A., T.A. Gill, S.B. Martin, and B.A. Webb. 2006. Effect of Campoletis sonorensis ichnovirus cys-motif proteins on Heliothis virescens larval development. J. Insect Physiol. 52:576-585.
Turnbull, M.W., S.B. Martin, and B.A. Webb. 2004. Quantitative analysis of hemocyte morphological abnormalities associated with Campoletis sonorensis parasitization. J. Insect Science. http://insectscience.org/4.11.
Webb, B. L., B. Diaz, S. B. Martin, and F. Lai. 2003. A reporter system for reverse transfection cell arrays. J Biomol Screen. 8:620-623.
Erin E. Maher, Ashley M. White, Ashley Craig, Shailesh Khatri, Percell T. Kendrick, Mary E. Matocha, Emma O. Bondy, Nikhil Pallem, Grace Breakfield, Madison Botkins, Olivia Sweatt, William C. Griffin, Brent Kaplan, Jessica J. Weafer, Joshua S. Beckmann, Cassandra D. Gipson, Synthetic contraceptive hormones occlude the ability of nicotine to reduce ethanol consumption in ovary-intact female rats, Drug and Alcohol Dependence, Volume 252, 2023, 110983, ISSN 0376-8716, https://doi.org/10.1016/j.drugalcdep.2023.110983
Ji A, Trumbauer AC, Noffsinger VP, Meredith LW, Dong B, Wang Q, Guo L, Li X, De Beer FC, Webb NR, et al. Deficiency of Acute-Phase Serum Amyloid A Exacerbates Sepsis-Induced Mortality and Lung Injury in Mice. International Journal of Molecular Sciences. 2023; 24(24):17501. https://doi.org/10.3390/ijms242417501
Shridas P, Ji A, Trumbauer AC, Noffsinger, VP, Meredith LW, De Beer FC, Mullick AE, Webb NR, Karounos DG, Tannock LR. Antisense Oligonucleotide Targeting Hepatic Serum Amyloid A Limits the Progression of Angiotensin II-Induced Abdominal Aortic Aneurysm Formation. Preprint. bioRxiv. 2023;2023.08.22.554377. doi:10.1101/2023.08.22.554377
Puleo, G. E., Borger, T., Rivera-Rivera, J. N., Montgomery, D., & Burris, J. L. (In press). A qualitative study of smoking-related causal attributions and risk perceptions in cervical cancer survivors.
Dinkins, R.D., C. Pflipsen, and G.B. Collins. 2003. Expression and deletion analysis of an Arabidopsis SUPERMAN-Like zinc finger gene. Plant Sci. 165:33-41.
Dinkins, R.D., C. Pflipsen, A. Thompson*, and G.B. Collins. 2002. Ectopic expression of an Arabidopsis single zinc finger gene in tobacco results in dwarf plants. Plant Cell Physiol J. 43:743-750.
Kelly, M.A., B.W. Chellgren, A.L. Rucker, J.M. Troutman, M.G. Fried, A.F. Miller, and T.P. Creamer.2001. Host-guest study of left-handed polyproline II helix formation. Biochemistry. 40:14376-14383.
Rucker, A.L. and T.P. Creamer. 2002. Polyproline II helices in protein denatured states: Lysine peptides revisited. Protein Science. 11:980-985.
Rucker, A.L., C.T. Pager, M.N. Campbell, J.E. Qualls, and T.P. Creamer. 2003. Host-guest scale of left-handed polyproline II helix formation. Proteins. 53:68-75.
Elliott, R., Brock, E., Taul, C., Asadipooya, A., Bocook, D., Burnette, T., Chauhan, I., Chhadh, B., Crane, R., Glover, A., Griffith, J., Hudson, J.A., Kashif, H., Nwadialo, O., Neely, D., Nukic, A., Patel, D., Ruschman, G., Sales, J., Yarbrough, T., and Cooper, R. October 2023. The effects of lithium substitution for sodium on proprioceptive sensory function and nerve conduction. NeuroSci. 4: 280-295. https://www.mdpi.com/2673-4087/4/4/23.
Elliott, R., Brock, E., Taul, C., Asadipooya, A., Bocook, D., Burnette, T., Chauhan, I., Chhadh, B., Crane, R., Glover, A., Griffith, J., Hudson, J.A., Kashif, H., Nwadialo, O., Neely, D., Nukic, A., Patel, D., Ruschman, G., Sales, J., Yarbrough, T., and Cooper, R. November 2023. The effects of zinc on proprioceptive sensory function and nerve conduction. NeuroSci. 4: 305-318. https://www.mdpi.com/2673-4087/4/4/25.
Reddy, M.S.S., S. Dasgupta, L. Rymarquis, and G.B. Collins. 2003. Analysis of the Agrobacterium tumefaciens pTiChry5 6bpromoter. J. Plant Biochem. Biotechnology. 12:87-91.
Reddy MSS, Dasgupta S, Rymarquis L, Collins GB, Dinkins RD (2003)Analysis of the Agrobacterium tumefaciens pTiChry5 6b promoter. J. Plant Biochem. Biotechnol. 12: 87-91.
Dong, X, Shannon, HD, Parker, C, Samantha De Jesus, S, Escobar, IC. Comparison of two low‐hazard organic solvents as individual and cosolvents for the fabrication of polysulfone membranes. AIChE J. 2019
Harwood J.D., R.A. Samson, Obrycki JJ (2006). No evidence for the uptake of Bt Cry1Ab-endotoxins by the carabid predator Scarites subterraneus (Coleoptera: Carabidae) in laboratory and field experiments. Biocontr. Sci. Technol. 16:377-388.
Salaita, L., R.K. Kar, M. Majee, and A.B. Downie. 2005. Identification and characterization of activation tagged Arabidopsis mutants exhibiting rapid seed germination. J. Exp. Bot. 56: 2059-2069.
Klyachkin, Y.M., K.D. Stoops, and R.J. Geraghty. 2006. Herpes Simplex virus type 1 glycoprotein L mutants that fail to promote trafficking of glycoprotein H and fail to function in fusion can induce binding of glycoprotein L-dependent anti-glycoprotein H antibodies. J. Gen Virol. 87:759-767.
Hasani, S., Young, L.E.A., Van Nort, W. et al. Inhibition of mitochondrial fission activates glycogen synthesis to support cell survival in colon cancer. Cell Death Dis 14, 664 (2023). https://doi.org/10.1038/s41419-023-06202-3.
Anderson HC, Warner SF, Ripley NE, Nielsen MK. Performance of three techniques for diagnosing equine tapeworm infection. Vet Parasitol. 2024 Apr;327:110152. doi: 10.1016/j.vetpar.2024.110152. Epub 2024 Feb 24. PMID: 38430622.
Ripley NE, Gravatte HS, Britton LN, Davis SM, Perrin GM, Warner S, Rexroat EK, Vetter AL, Maron EES, Finnerty CA, Stanton V, Nielsen MK. Parascaris spp. eggs shedding patterns in juvenile horses. Vet Parasitol. 2023 Oct;322:110029. doi: 10.1016/j.vetpar.2023.110029. Epub 2023 Sep 14. PMID: 37734131.
Babb, K., K. von Lackum, R.L. Wattier, S.P. Riley, and B. Stevenson. 2005. Synthesis of autoinducer-2 by the Lyme disease spirochete, Borrelia burgdorferi. J. Bacteriol. 187:3079-3087.
Stevenson, B., K. von Lackum, R.L. Wattier, J.D. McAlister, J.C. Miller, and K. Babb. 2003. Quorum sensing by the Lyme disease spirochete. Microbes Infect. 5:991-997.
von Lackum, K., K. Babb, S.P. Riley, R.L. Wattier, T. Bykowski, and B. Stevenson. 2006. Functionality of Borrelia burgdorferi LuxS: the Lyme disease spirochete produces and responds to the pheromone autoinducer-2, and lacks a complete activated-methyl cycle. Int. J. Med. Microbiol. 296(S1):92-102.
Webb B.A., W.E Barney, D.L. Dahlman, S.N. DeBorde, C.Weer, N.M. Williams, J.M. Donahue, and D.J. McDowell. 2004. Eastern tent caterpillars (Malacomsona americanum) cause mare reproductive loss syndrome. J. Insect Physiol. 50:185-193.
Barrett D.G., C.M. Minder, M.U. Mian, S.J. Whittington, W.J. Cooper, K.M. Fuchs, A. Tripathy, M.L. Waters, T.P. Creamer, and G.J. Pielak. 2006. Pressure perturbation calorimetry of helical peptides. Proteins. 63(2):322-6.
Whittington, S.J., B.W. Chellgren, V.M. Hermann, and T.P. Creamer. 2005. Urea promotes polyproline II helix formation: implications for protein denatured states. Biochemistry. 44:6269-6275.
Whittington, S.J. and T.P. Creamer. 2003. Salt bridges do not stabilize polyproline II helices. Biochemistry. 42:14690-14695.
Stork, J., D. Harris, J. Griffiths, B. Williams, F. Beisson, Y. Li-Beisson, V. Mendu, G. Haughn, and S. DeBolt. 2010. CELLULOSE SYNTHASE9 serves a non-redundant role in secondary cell wall synthesis in Arabidopsis epidermal testa cells. Plant Physiol. 10.1104/pp.110.154062.
Thatcher, S.E., Zhang, X., Woody, S., Alsiraj, Y., Charnigo, R., Daugherty, A., and Cassis, L.A. 2015. Exogenours 17-B estradiol administration blunts progression of established angiotensin II-induced abdominal aortic aneurysms in femaile ovariectomized mice. Biol Sex Differ. 2015 Jun 29;6:12. doi: 10.1186/s13293-015-0030-1.
